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The Sona-6 back-illuminated camera offers a very wide performance envelope from a sensor that gives an excellent balance of sensitivity, resolution and speed. This makes it a highly applicable and effective imaging solution for many different applications from routine fluorescence imaging to localisation based super resolution like DNA-PAINT. The updated Sona-6 introduces an additional new High-Speed Mode. This further extends the suitability to applications that demand the highest possible speeds- but maintain a low noise floor and quantitative accuracy e.g. calcium flux and ion imaging, FRET, FRAP, blood flow.
The ability of a camera to run at very high frame rates only tells part of the story. There are other criteria that must be met to make high-speed imaging possible for real-world imaging applications. Failure to meet some of these requirements would mean that the camera may offer very impressive imaging performance on the specification sheets, yet will not translate across into practice. These requirements are outlined below:
Figure 1: The grey line indicates an ideal camera that is perfect in every parameter. The new High-Speed mode of the Sona-6 has been configured and optimised to provide excellent performance for a wide range of high speed imaging applications.
In normal operation modes the sensor reads in a rolling shutter fashion, 1 row at a time. In high-speed mode, the sensor runs both of the readout channels available, simultaneously in 11-bit. The even and odd rows are thus read at the same time and has the effect of doubling the speed for each frame to be read out. After readout the 11-bit datastream pairs from each of the odd and even readout channels are re-combined. Finally, the data is packaged into a 12-bit format for downstream compatibility.
The frame rates for each of the three operational modes are outlined below for both USB and CoaXPress operation. The higher data throughput of the 2 lane coaXPress interface available on the Sona can be seen for high-speed mode operation as well as the higher ROI sizes for High Dynamic range mode. For USB 3 operation, the maximum frame rate supported by the interface will be ~40 fps regardless of mode in full frame. Burst rates for a series of frames will be higher, until the data reaches that of the maximum transfer rate of the interface. Note that with sCMOS sensors, including Sona, the frame rate is dependent on the height of rows. Cropping the row width does not impact speeds. This is because each row must be read out by the sensor as a complete row, and then the unneeded row information removed before it is sent on to the control PC.
Array Size (w x h) | Low Noise 2-CMS (12-bit) | High Dynamic Range (16-bit) | High Speed (11-bit) |
USB (CXP) | USB (CXP) | USB (CXP) | |
2048x2048 | 43 (44) | 40 (74) | 40 (135) |
2048x1024 | 87 (87) | 148 (148) | 151 (271) |
2048x512 | 174 (174) | 295 (295) | 532 (541) |
2048x256 | 346 (346) | 587 (587) | 1046 (1081) |
2048x128 | 868 (687) | 1165 (1166) | 2032 (2125) |
Note that frame rates are given using Solis Imaging Software. Frame rates will vary with different software and other overheads of complete imaging systems.
The 3 different modes available on the Sona-6 series offer exceptional imaging flexibility. Each mode has been carefully configured and optimised to best match the intended applications. Refer to the following table to help you determine which imaging mode is suitable for your intended use.
Low Noise Mode 2-CMS (12-bit) | High Dynamic Range Mode (16-bit) | High Speed Mode (11-bit) | |
Read Noise (e-) | £1.0 | £1.6 | £1.9 |
Max Frame rate (frames per second at full array) | 43 | 74 | 135 |
Well depth (e-) | 1,100 | 42,000 | 1,800 |
Approx. File Size (full array) | 6.3 Mb | 8.4 Mb | 6.3 Mb |
Intended Use | For maximum sensitivity | For the highest dynamic range. | For maximum imaging speeds. |
Application Guidelines | Good imaging speeds are maintained even with the very low noise floor. Ideal for Live cell imaging of the weakest signals and recommended first option for confocal imaging. Image quality and detection will be improved compared to the HDR or HS modes. If image becomes saturated and there is insufficient signal handling capacity change to HDR mode. | Use HDR mode for samples with high intrascene dynamic range. The Extended Dynamic Range technology allows a “single snap” for any image. Example applications are imaging neurons with both brighter and weaker regions. Processes, reactions and quantitative measurements that occur over larger concentrations and ranges. | Use the HS mode to push fastest possible frame rates over a wider field of view, or for when you need the fastest temporal resolution at smaller regions of interest. Ideal for capturing faster processes and dynamic events of the cell. 11-bit provides sufficient sampling for many fast applications to maintain precision and accuracy in measurement. |
Note that frame rates are given using Solis Imaging Software. Frame rates will vary with different software and other overheads of complete imaging systems.
The updated Sona Extreme specification which includes the High Speed mode, has been applied to all Sona-6 cameras from November 2022. This also applies to Marana-6 cameras featuring the same GS2020BSI sensor.
Available Mode* | Original Sona-6 and Marana-6 release | Sona-6 “Extreme” and Marana 4.2B-6 |
High Dynamic Range (16-bit HDR) | ✔ | ✔ |
Low Noise (12-bit 2-CMS) | ✔ | ✔ |
High Speed (11-bit HS) | ✘ | ✔ |
The updated Sona will share software compatibility with the original Sona-6 in Low Noise and High Dynamic Range modes. Camera features are controlled at the camera level meaning that updates do not impact the SDK level and interactions with the acquisition software. Note that CoaXPress and High-Speed modes may not be validated in certain 3rd party software. Contact your software vendor for further information.
It should be noted that general applications will be well covered by the low-noise and high dynamic range modes since typical fluorescence imaging applications require exposures in the region of 50-250 milliseconds or longer. It is possible to crop the sensor in these modes and increase frame rates while keeping the main benefits of that mode:
When these modes are not sufficiently fast, or over as wide a field of view as desired, high-speed mode will provide a much higher speed capacity. Please refer to the following useful information on running at high speeds:
Date: November 2022
Author: Dr Alan Mullan
Category: Technical Article